Abstract: Pretreatment is a critical step in the conversion of lignocellulose into biofuels and biochemicals. During pretreatment, the recalcitrance of lignocellulose is reduced, e.g. by removing lignin, thereby making the carbohydrates more accessible for enzymatic saccharification. Fungal delignification by white-rot fungi is a biotechnological alternative to chemical/physicochemical methods, which is carried out in solid-state fermentation with mild reaction conditions and without the formation of microbial inhibitors. However, fungal pretreatment presents some challenges, such as long pretreatment time, non-selective and low delignification, low enzymatic digestibility and feedstock sterilisation requirement, making its commercial implementation challenging compared to conventional methods. This study investigates the possibility of improving and characterising the solid-state fungal pretreatment of poplar wood by Phanerochaete chrysosporium. The individual and combined effects of MnSO4 and CuSO4 supplements on the delignification of sterilised wood are investigated using response surface methodology to improve the degree and selectivity of fungal delignification. Spore-inoculated solid-state fermentations are carried out for 4 weeks in sterile vented bottles. The mechanism of the concerted action of the metal ions on lignin degradation is then elucidated by relating fungal growth and ligninolytic enzyme activities to lignocellulose degradation as a function of pretreatment time. The optimised metal-supplemented system is then applied to the pretreatment of non-sterilised wood using different inoculation techniques (spores and pre-colonised substrate), nutrients (metal ions with or without glucose and sodium nitrate) and cultivation environments (sterile aerated bottles and open trays). The fermentations are then characterised using infrared spectroscopy, in particular NIR and ATR-FTIR spectroscopy, with the aim of developing rapid lignin quantification methods as an alternative to conventional wet chemical methods. Finally, the feasibility of producing fermentable sugars from sterilised and non-sterilised poplar wood using fungal pretreatment is evaluated through a techno-economic analysis. Supplementing the pretreatment system with 2.01 µmol CuSO4 and 0.77 µmol MnSO4 g-1 wood resulted in 1.9-fold higher lignin degradation, 2.3-fold higher delignification selectivity value and 2.9-fold higher glucose yield. The improved delignification could be explained by the concerted action of Mn2+ and Cu2+ ions, with Mn2+ ions inducing and Cu2+ prolonging manganese peroxidase production responsible for delignification. Fungal pretreatment at non-sterile conditions was obtained using trays in a simple solid-state fermentation set-up without sterile aeration. A 1:3 ratio of pre-colonised and untreated wood was applied for inoculation and only Cu2+, Mn2+ and sodium nitrate as supplements. Remarkably, this technology resulted in a comparably high glucose yield (28.51 ± 0.28%) to the traditional method using sterilised wood, sterile aeration and spores as inoculum, while reducing the amount of wood to be sterilised by 71.2%. Infrared spectroscopy-based methods with high coefficients of determination (R_CV

Abstract: Pretreatment is crucial for the conversion of lignocellulose to biofuels. Unlike conventional chemical/physicochemical methods, fungal pretreatment uses white-rot fungi and mild reaction conditions. However, challenges, including substrate sterilization, long duration, and low sugar yields associated with this method, contribute to lower techno-economic performance, an aspect that has rarely been investigated. This study aimed to evaluate the feasibility of fungal pretreatment of nonsterilized poplar wood. Various factors, including inoculum types, fermentation supplements, and cultivation methods, were investigated to optimize the process. A techno-economic assessment of the optimized processes was performed at a full biorefinery scale. The scenario using nonsterilized wood as a substrate, precolonized wood as an inoculum, and a 4 week pretreatment showed a 14.5% reduction in sugar production costs (€2.15/kg) compared to using sterilized wood. Although the evaluation of nonsterilized wood pretreatment showed promising cost reductions, fungal pretreatment remained more expensive than conventional methods due to the significant capital investment required.

Abstract: Exposure to air pollution, such as particulate matter (PM), causes adverse health effects, particularly to the respiratory tract and cardiovascular system. PM is the collective name for all kinds of particles ranging from small particles and liquid droplets, which contain organic compounds, acids and metals, to soil or dust particles. One distinguishes PM10, PM2.5 and PM0.1, which have aerodynamic particle sizes smaller than 10, 2.5 and 0.1 µm, respectively. It is mainly the latter that is the most harmful, as PM0.1 penetrates deep into the respiratory system and carries relatively more toxic substances than the other PM fractions. Over a 15-year period, PM concentrations in European member states have fallen by about 30%. Nevertheless, the World Health Organisation (WHO) air quality guidelines, which became stricter in 2021, are exceeded in most places around the world. Particularly in cities, excessive levels of PM are measured and it is here that PM mitigation should be investigated. For this, the implementation of urban green infrastructure, including trees, shrubs, green roofs and green walls, is being looked at. Plants hinder airflow and remove PM from the air by deposition on their leaves and branches. This process is known as dry deposition. Plants can capture PM very efficiently, due to their complex structure of leaves and branches. Green walls offer significant advantages over other types of urban green infrastructure because they can grow on the huge available wall area and, because they do not hinder air circulation, as we sometimes see with trees. Green walls are believed to have a much greater, untapped potential to reduce PM pollution. However, a literature review showed that we do not know the quantitative impact of green walls and lack the tools and/or general methodology to do so. The objective of this thesis is therefore to develop a method for assessing PM removal by green walls, based on predictive models and based on relevant parameters that are experimentally determined. Computational fluid dynamics (CFD) is a numerical method to simulate airflow in complex environments such as cities. These models can also simulate the vegetation-wind interaction in detail and are interesting tools to assess the effect of green walls on PM concentrations in real environments. It is important to first study the aerodynamic effect of green walls and parameterise it correctly in CFD models. Plants decrease the wind speed and create turbulence through a combination of viscous and form drag, which are determined by the permeability (K) and drag coefficient (Cd), respectively. Wind tunnel experiments were conducted with three commonly found climbers (Hedera helix, Parthenocissus tricuspidata and Parthenocissus quinquefolia) and the variation of leaf area density was investigated for two of them. It was observed that the air resistance depended on plant species, leaf area density and wind speed. The difference between the plant species was assigned to the functional leaf size (FLS), the ratio of the largest circle within the boundaries of the leaf to the total leaf area. FLS is likely associated with other morphological characteristics of plants that, when considered collectively, provide a more comprehensive representation of leaf complexity. The pressure and velocity measurements obtained were used to optimise the permeability and drag coefficient in a CFD model. At wind speeds below 0.6 m s-1, the resistance was mainly determined by viscous drag and a larger leaf size resulted in a higher viscous drag. At wind speeds above 1.5 m s-1, form drag was dominant and the parameterised Cd decreased with increasing wind speed due to the sheltering effect of successive plant elements. The leaf area density had a significant effect on K and Cd and, is therefore an important plant parameters in CFD models. The main conclusion here is that the common practice of using a constant Cd to model the influence of plants on the air flow leads to deviations from reality. Wind tunnels are highly suitable to study the impact of green walls on PM concentration under controlled environmental conditions. For this purpose, a new wind tunnel setup was built and great attention was paid to obtaining a uniform air flow. Thus, based on CFD models, appropriate flow controllers were chosen, consisting of honeycombs and screens with different mesh sizes. New PM generation devices and measuring equipment were installed and set up appropriately. Devices were available for generating and measuring ultrafine dust (<0.1 µm, i.e. PM0.1) and fine dust (<0.3 µm, i.e. PM0.3) consisting of soot particles, and, on the other hand, fine dust with particle sizes smaller than 2.5 (PM2.5) and 10 µm (PM10) consisting of 'Arizona fine test dust'. With the new wind tunnel setup, it was possible to measure the influence of Hedera helix (common ivy), grown in a planter against a climbing aid, on the PM concentration and this was expressed by a collection efficiency, i.e. the difference in concentration in front and behind the plants normalised for the incoming concentration. The collection efficiency of H. helix depended on the particle size of the PM and wind speed. The collection efficiency decreased when the particle size increased from 0.02 to 0.2 µm and increased again for particle sizes above 0.3 µm. The collection efficiency also increased with increasing wind speed, especially for particle sizes > 0.03 µm. On the other hand, relative humidity and the type of PM (soot or dust) did not significantly affect the collection efficiency. The main objective of this study was to obtain an optimised size-resolved deposition model. Dry deposition occurs through several mechanisms, in particular gravity, diffusion, impaction and interception, and the subsequent resuspension of deposited PM back to the environment. The modelling of these mechanisms was described by \citet{Zhang2001} and \citet{Petroff2010}. The data obtained from the wind tunnel experiments allowed validating these deposition models. It was for the first time that deposition of real PM on green walls was studied. The different PM deposition mechanisms were found to be strongly dependent on particle size and wind speed. The models of \citet{Zhang2001} and \citet{Petroff2010} each matched PM concentration measurements for only certain particle sizes. Therefore, a combination of the two models was investigated and the root mean square error was lower by on average 3.5% (PM < 0.03 µm) and 46% (PM > 0.03 µm) compared to the original models at wind speeds greater than 1.5 m s-1. For wind speeds less than 1.5 m s-1, the optimised model did not differ from the original models. The optimised model was able to meet the imposed criteria for air quality models, where a correct model exhibits low deviation from measurements ('normalised mean square error' < 1.5), low bias ('fractional bias' between -0.3 and 0.3) and high R2. In comparison, the R$2$ of the optimised model was 0.57, while that of Zhang et al. (2001) and Petroff et al. (2010) was 0.23 and 0.31, respectively. The optimised model was however characterised by a high scatter, with the fraction of modeled results located within a factor of two of the measurements being lower than 50. A model study with a green façade oriented parallel to the incoming airflow showed that deposition by interception and impaction reduced remarkably, but that the orientation had no effect on deposition by Brownian diffusion. A promising green wall form for PM mitigation is the living wall system (LWS). LWS consist of supporting structures with substrate to grow plants in and can be planted with a variety of plant species. This allows to select plant species with optimal characteristics to achieve PM deposition. These characteristics refer to the macro- and microstructure of the leaves, and research has been conducted mainly on these. On the other hand, the influence of the supporting structure and substrate on PM concentrations has rarely been studied. With the new wind tunnel setup, LWS from different manufacturers were tested for their ability to capture PM. The setups were subjected for three hours to an air flow with a low PM concentration (resuspension phase) and then for three hours to an air flow to which additional PM was added (deposition phase). Some setups were able to decrease the PM concentration during both phases, while others just caused the concentration to increase. Some systems were able to reduce particulate matter concentration during both phases, namely LWS consisting of planters (-2% and -4% for PM0.1 and PM2.5, respectively) and textile cloths (-23% and -5% for PM0.1 and PM2.5, respectively). While other systems actually resulted in an increase in concentration especially LWS existing textile fabrics consisting of geotextiles (+11% for both PM fractions) and with moss as substrate (+2% and +5% for PM0.1 and PM2.5, respectively). This highlights the importance of careful selection of suspension systems to reduce particulate matter concentrations. Further research is therefore needed on the materials used in these systems in relation to their particulate content, as well as on plant development in these systems. In addition to air measurements, measurements were taken of the amount of PM deposited on the leaves and suspension system of LWS. This allowed the difference in PM resuspension and deposition between plant species to be investigated. The amount of deposited particulate matter was determined based on 'saturation isothermal remanent magnetisation' (SIRM), a measure of magnetisable particulate matter. This was possible because the added 'Arizona fine test dust' contained iron oxide. However, no significant difference was observed between the SIRM values measured before the wind tunnel experiment, after resuspension and after deposition. This suggested that the iron oxide content in the Arizona fine test dust was too low to measure a significant difference in the SIRM values on leaves after three hours. The plant species did give rise to different SIRM values ranging between 5 and 260 µ A. In particular, SIRM values above 26 µ A were observed for the plant species that were grouped due to their significantly higher accumulation of PM. 'Specific leaf area' (SLA), specifically the ratio of the one-sided 'fresh' leaf area to its dry mass, was the significant leaf characteristic. SLA correlated with leaf complexity. In particular, plant species with elongated leaves were characterized by low SLA, high FLS and high complexity and showed significantly higher SIRM values. Finally, the optimised size-resolved deposition model was also tested in an urban model to get an idea of the impact of a green wall on PM concentrations in a so-called 'street canyon'. These are narrow streets with high buildings on both sides, making air pollution more persistent. To this end, an ideal scenario was tested in which a green wall was introduced along both sides of the street over a length of about 270 m. The model result showed a decrease in PM2.5 and PM10 of 46 ± 12% and 52 ± 14%. This result is of course for a very optimal scenario where the green wall covers the entire building façades. Since this is not feasible in reality, other ways of promoting contact between green walls and polluted air can be explored. The insights obtained illustrate that the use of climbing plants can be a cost-effective and environmentally friendly solution to reduce PM concentrations. Moreover, the findings showed that models can be used to investigate the impact of green walls on PM levels. These findings fit within the broader context of designing healthy and sustainable urban environments and developing innovative solutions based on solid scientific knowledge.

Abstract: Stomata are essential for the exchange of water vapour and atmospheric gases between vascular plants and their external environments. The stomatal geometries of many plants appear to be elliptical. However, prior studies have not tested whether this is a mathematical reality, particularly since many natural shapes that appear to be ellipses are superellipses with greater or smaller edge curvature than predicted for an ellipse. Compared with the ellipse equation, the superellipse equation includes an additional parameter that allows generation of a larger range of shapes. We randomly selected 240 stomata from each of four Magnoliaceae species to test whether the stomatal geometries are superellipses or ellipses. The stomatal geometries for most stomata (943/960) were found to be described better using the superellipse equation. The traditional “elliptical stomata hypothesis” resulted in an underestimation of the area of stomata, whereas the superellipse equation accurately predicted stomatal area. This finding has important implications for the estimation of stomatal area in studies looking at stomatal shape, geometry, and function.

Abstract: Our scientific and technological worldviews are largely dominated by the concepts of entropy and complexity. Originating in 19th-century thermodynamics, the concept of entropy merged with information in the last century, leading to definitions of entropy and complexity by Kolmogorov, Shannon and others. In its simplest form, this worldview is an application of the normal rules of arithmetic. In this worldview, when tossing a coin, a million heads or tails in a row is theoretically possible, but impossible in practice and in real life. On this basis, the impossible (in the binary case, the outermost entries of Pascal's triangle xn and yn for large values of n) can be safely neglected, and one can concentrate fully on what is common and what conforms to the law of large numbers, in fields ranging from physics to sociology and everything in between. However, in recent decades it has been shown that what is most improbable tends to be the rule in nature. Indeed, if one combines the outermost entries xn and yn with the normal rules of arithmetic, either addition or multiplication, one obtains Lamé curves and power laws respectively. In this article, some of these correspondences are highlighted, leading to a double conclusion. First, Gabriel Lamé's geometric footprint in mathematics and the sciences is enormous. Second, conic sections are at the core once more. Whereas mathematics so far has been exclusively the language of patterns in the sciences, the door is opened for mathematics to also become the language of the individual. The probabilistic worldview and Lamé's footprint can be seen as dual methods. In this context, it is to be expected that the notions of information, complexity, simplicity and redundancy benefit from this different viewpoint.

Abstract: In present work, we have performed the Grand Canonical Monte Carlo (GCMC) simulations to quantify CO2 capture inside porous silica at high operating temperatures of 673.15 K and 873.15 K; and over a operating pressure range of 500 kPa – 4000 kPa that are methane steam reforming process parameters. Related chemical potential values at these thermodynamic conditions are obtained from the bulk phase simulations in the Canonical ensemble in conjunction with Widom’s insertion technique, where the CO2 has been accurately represented by TraPPE force field. Present structure of the porous silica is a single slit pore geometry of various heights (H = 20 Å, 31.6 Å, 63.2 Å and 126.5 Å), dimensions in which possible vapour-liquid equilibria for generic square well fluids has been reported in literature. Estimation of the pore-fluid interactions show a higher interaction between silica pore and adsorbed CO2 compared to the reported pore-fluid interactions between homogeneous carbon slit pore and adsorbed CO2; thus resulting in an enhancement of adsorption inside silica pores of H = 20 Å and H = 126.5 Å, which are respectively 3.5 times and 1.5 times higher than that in homogeneous carbon slit pores of same dimensions and at 673.15 K and 500 kPa. Estimated local density plots indicate the presence of structured layers due to more molecular packing, which confirms possible liquid-like and vapour-like phase coexistence of the supercritical bulk phase CO2 under confinement.

Abstract: Delve into the diverse aspects of plant morphology, their responses to global climate change, and the spatiotemporal dynamics of forest productivity. Join us on a journey through the intricate web of plant characteristics and their impact on the environment.

Abstract: Dry deposition is an important process determining pollutant concentrations, especially when studying the influence of urban green infrastructure on particulate matter (PM) levels in cities. Computational fluid dynamics (CFD) models of PM capture by vegetation are useful tools to increase their applicability. The meso-scale models of Zhang et al. (Atmos Environ 35:549-560, 2001) and Petroff and Zhang (Geosci Model Dev 3(2):753-769, 2010) have often been adopted in CFD models, however a comparison of these models with measurements including all PM particle sizes detrimental to health has been rarely reported and certainly not for green wall species. This study presents dry deposition experiments on real grown Hedera helix in a wind tunnel setup with wind speeds from 1 to 4 m s(-1) and PM consisting of a mixture of soot (0.02 – 0.2 mu mu m) and dust particles (0.3 – 10 mu mu m). Significant factors determining the collection efficiency (%) were particle diameter and wind speed, but relative air humidity and the type of PM (soot or dust) did not have a significant influence. Zhang's model outperformed Petroff's model for particles < 0.3 mu mu m, however the inclusion of turbulent impaction in Petroff's model resulted in better agreement with the measurements for particles > 2 – 3 mu mu m. The optimised model had an overall root-mean-square-error of similar to 4% for collection efficiency (CE) and 0.4 cm s-1 for deposition velocity (nu d), which was shown to be highly competitive against previously described models. It can thus be used to model PM deposition on other plant species, provided the correct parameterisation of the drag by this species. A detailed description of the spatial distribution of the vegetation could solve the underestimation for particle sizes of 0.3 – 2 mu mu m.