Abstract: This dataset contains individual EEL and EDX events where for every event (electron or X-ray), their energy and time of arrival is stored. The experiment was performed in a transmission electron microscope (Tecnai Osiris) at 200 keV. The material investigated is an Al-Mg-Si-Cu alloy. The 'full_dataset.mat' contains the full dataset and the 'subset.mat' has the first five frames of the full dataset. The attached 'EELS-EDX.ipynb' is a jupyter notebook file. This file describes the data processing in order to observe the temporal correlation between the electrons and X-rays.

Abstract: In the broad context of food and environmental safety, the development of selective and sensitive analytical tools for the detection of β-lactam antibiotics in milk down to their Maximum Residues Limits (MRL), is still an open challenge. To address this need, the design of new bio(mimetic) electrochemical sensors was investigated in the present thesis. These sensors are based on the intrinsic electrochemistry of β-lactam antibiotics, taking advantages of the characteristic electrochemical fingerprints of the core structures and redox active side chain groups. The electrochemistry of nafcillin (NAF) and the isoxazolyl penicillins (ISOXA) was investigated, identifying the peculiar electrochemical fingerprint of each antibiotic, proving that it is possible to use electrochemistry for the selective detection of these antimicrobial drugs. Once verified the applicability of a direct detection, different sensor configurations were tested mainly focusing on: – the selection and validation of aptamers to be used as bioreceptors in the development of β-lactam biosensors; – the design of biomimetic receptors, particularly molecularly imprinted polymers, and other synthetic electrode modifiers compatible with a direct detection strategy. The selection of novel aptamers was performed following both a traditional FluMag SELEX protocol and a novel variant based on graphene oxide (GO). First results with the modified GO-SELEX are promising but more work still needs to be done to validate this novel approach. The few aptamers for β-lactam antibiotics, already reported in literature by other groups, were poorly characterized up to now. For this reason, a multi-analytical characterization protocol for aptamer binding studies was optimized and validated by focusing on aptamer AMP17 against ampicillin. The protocol combines ITC, nESI-MS and 1H-NMR. Very striking was the fact that the aptamer sequence did not show any sign of specific binding for its target, even if it was used in many other studies in the past. This thesis now offers a validated protocol for testing the affinity and binding capabilities of aptamer sequences. In parallel, the functionalization of the electrode surface with polymer modifiers was studied. In particular we optimized a MIP electrochemical sensor based on 4-aminobenzoic acid for the direct electrochemical detection of CFQ. Another approach was tested based on the intrinsic affinity of NAF for an oPD electropolymerized film on the electrode surface. Both sensors were found to be sensitive and selective for the detection of CFQ and NAF at MRLs in buffer solutions. The proposed protocols are robust and promising for technological transfer. Lastly, the research activity was directed towards milk sample analysis following two parallel routes: the development of a pre-treatment protocol for raw milk, based on solvent addition (ACN or ISO), and the study of β-lactam antibiotics electrochemistry in undiluted raw milk with addition of KNO3 as supporting electrolyte. Both approaches gave encouraging results and the detection of NAF, CFQ and CFU in the micromolar range was achieved, with the second approach in undiluted raw milk.

Abstract: Transition-metal dichalcogenides such as MoS2 or WS2 are semiconducting materials with a layered structure. One single layer consists of a plane of metal atoms terminated on the top and bottom by the chalcogen atoms sulfur, selenium, or tellurium. These layers show strong in-plane covalent bonding, whereas the Van-der-Waals bonds in between adjacent layers are weak. Those weak bonds allow the microcleavage and extraction of a monolayer. Transistors built on such monolayer nanosheets are promising due to high electrostatic controllability in comparison to a bulk semiconductor. This is important for fast switching speed and low-power consumption in the OFF-state. Nonetheless, prototypes of such nanosheet transistors show non-idealities due to the fabrication process. Closed films on a large area cannot be obtained by mechanical exfoliation from mm-sized crystals. For wafer-level processing, synthetic growth methods are needed. It is a challenge to obtain a few layer thick crystals with large lateral grains or even without grain boundaries with synthetic growth techniques. This requires pre-conditioned monocrystalline substrates, high-temperature deposition, and polymer-assisted transfer to other target substrates after the growth. Such transfer is a source of cracks in the film and degrades the layers' promising properties by residual polymer from the bond material. Apart from transfer, patterning of the stacked 2D layers is necessary to build devices. The patterning of a 2D material itself or another material on top of it is challenging. The integration of the nanosheets into miniaturized devices cannot be done by conventional continuous-wave dry etching techniques due to the absence of etch stop layers and the vulnerability of these thin layers. To eliminate these issues in growth and integration, we explored the deposition methods on wafer-level and low-damage integration schemes. To this end, we studied the growth of MoS2 by a hybrid physical-chemical vapor deposition for which metal layers were deposited and subsequently sulfurized in H2S to obtain large area 2D layers. The impact of sulfurization temperature, time, partial H2S pressure, and H2 addition on the stoichiometry, crystallinity, and roughness were explored. Furthermore, a selective low-temperature deposition and conversion process at 450 °C for WS2 by the precursors WF6, H2S, and Si was considered. Si was used as a reducing agent for WF6 to deposit thin W films and H2S sulfurized this film in situ. The impact of the reducing agent amount, its surface condition, the temperature window, and the necessary time for the conversion of Si into W and W into WS2 were studied. Further quality improvement strategies on the WS2 were implemented by using extra capping layers in combination with annealing. Capping layers such as Ni and Co for metal-induced crystallization were compared to dielectric capping layers. The impact of the metal capping layer and its thickness on the recrystallization was evaluated. The dielectric capping layer's property to suppress sulfur loss under high temperature was explored. The annealings, which were done by rapid thermal annealing and nanosecond laser annealing, were discussed. Eventually, the fabrication of a heterostack with a MoS2 base layer and selectively grown WS2 was studied. Atomic layer etching was identified as attractive technique to remove the solid precursor Si from MoS2 in a layer-by-layer fashion. The in-situ removal of native SiO2 and the impact towards MoS2 was determined. The created patterned Si on MoS2 was then converted into patterned WS2 on MoS2 by the selective WF6/H2S process developed earlier. This procedure offers an attractive, scalable way to enable the fabrication of 2D devices with CMOS-compatible processes and contributes essential progress in the field 2D materials technology.

Abstract: Photocatalysis has been labeled for decades as a promising technique for air purification. The principle seems straightforward and requires a photocatalyst that is immobilized on a substrate, and one or more UV sources to activate the photocatalyst. No waste products are produced, the reactions occur in mild conditions and the supplies are relatively cheap. Yet it seems that the commercialization of photocatalytic systems does not break through on the global market. The aim of this thesis is to identify and tackle the bottlenecks that impede commercialization from an application-oriented approach. The problem of indoor air pollution is enhanced by the fact that people spend more and more time indoors and that ventilation is kept to a minimum as an energy-saving measure. This inevitably leads to an accumulation of volatile organic compounds (VOCs) that are emitted by e.g. building materials, paint and furniture. Human exposure to VOCs is directly related to the sick building syndrome leading to complaints such as headache, fatigue, dizziness and lack of concentration. In addition, exposure to VOCs is related to serious long-term health effects such as cancer or respiratory diseases. Therefore, significant research efforts are focused on advanced indoor air purification methods. Integration or retrofitting of a photocatalytic (PCO) air purifying unit into heating, ventilation and air conditioning (HVAC) equipment has been chosen as an interesting approach. As a starting point of this thesis, the operational conditions of a ventilation system were mapped. These systems are characterized by high flow rates and the necessity of minimal pressure losses. Pressure losses increase the energy demand and can lead to failure of the ventilation fan and thereby undermine the proper functioning of the ventilation system. A suitable substrate must allow the contaminated air to pass through with a minimal pressure drop, allow sufficient contact time between VOC and photocatalyst, have a large surface area available for coating with excellent adhesion, and be transparent to UV light. Therefore, the permeability and the available exposed surface were selected as main selection criteria. After a thorough quantitative analysis of potential substrates, borosilicate glass tubes were selected. Glass tubes can easily be stacked to constitute a transparent monolithic multi-tube reactor, with their length parallel to the air flow in order to minimize the pressure drop. Moreover, borosilicate glass is relatively inexpensive and has excellent UV-A light transmitting properties. Based on a literature study, a sol-gel coating procedure was selected that is extremely suitable for coating glass substrates. The next step was to optimize the amount of P25 (commercial titanium dioxide) in the photocatalytic sol-gel coating for its application. More P25 in the sol-gel coating results in a higher adsorption capacity and consequently a higher photocatalytic activity, but greatly reduces the transparency of the coating. After an in-depth study, the concentration of 10 g L-1 P25 was selected as the most feasible for multi-tube reactors. Since the operation of photocatalytic reactors is based on a complex interaction of physical and chemical processes, mathematical models were developed, supported by experimental data, that include all these phenomena as a tool for reactor design and optimization. By making use of such models, time-consuming and expensive experimental research can be minimized. However, the experimental validation of models is of utmost importance to prove its reliability and accuracy. Intrinsic kinetic parameters provide the fundamentals for these models as they describe the photocatalytic reaction rate, independent of fluid dynamics, reactor geometry and radiation field. In this work they were estimated by means of a Computational Fluid Dynamics (CFD) study, based on FTIR (Fourier-transform infrared spectroscopy) experiments with a lab scale multi-tube reactor. The kinetic parameters were validated by an alternative analytic approach, emphasizing the accuracy and reliability of the simulations. Finally, the aforementioned CFD approach, based on the simultaneously modelling of airflow, mass transfer, UV light irradiation and photocatalytic reactions, was used to obtain insights for the light source configuration in upscaled multi-tube reactors. After taking all these insights and some practical implications into account, a final upscaled multi-tube reactor design was proposed and converted into a first built prototype. Subsequently, it was evaluated according the CEN-EN-16486-1 standard for VOC removal by the external scientific research center ‘CERTECH’. The scientific results, regarding the mineralization of the VOCs and photocatalytic efficiency of the reactor, demonstrated the feasibility for indoor air purification by the upscaled multi-tube reactor and the possible implementation in ventilation systems.

Abstract: At or below the surface of painted works of art, valuable information is present that provides insights into an object’s past, such as the artist’s technique and the creative process that was followed or its conservation history, but also on its current state of preservation. Typically, a (very) limited set of small paint samples is taken which provide direct access to the individual paint layers. The chemical build-up of these layers can then be investigated in great detail using various microscopic analytical methods. However, in recent years a new trend towards both elemental and chemical imaging techniques has been set which are capable of visualizing the (often) heterogeneous composition of painted objects on a macroscopic scale. In this dissertation, various forms of specificity attainable with X‑ray powder diffraction (XRPD) imaging are explored: at the chemical, material and spatial level. This high specificity is illustrated throughout several applications stemming from the field of cultural heritage, both at the macroscopic (MA) and microscopic (µ) scale. As a first step, XRPD imaging was transformed to a transportable instrument that can be employed for the in situ investigation of artworks, e.g., inside museums and conservation workshops. With this unique instrument large‑scale maps (cm2 – dm2) reflecting the distribution of crystalline phases on/below the surface of flat painted artefacts can be visualized in a noninvasive manner. In this way compound-specific information was attained which can be related to original pigments or materials that have been added in a later stage and even degradation/secondary products that have formed spontaneously inside the paint layers. Additionally, with MA‑XRPD imaging it was possible to link quantitative information of pigment compositions and preferred orientation effects to the 2D compound‑specific distribution images, allowing for a further distinction between very similar artists’ materials. Furthermore, promising results for the limited depth-selectivity of this technique, obtained by exploiting the small shift in the position of the diffraction signals originating from the layered sequence of the pigments, are shown. Finally, a minute paint sample from Wheat stack under a cloudy sky by Van Gogh was investigated at a synchrotron radiation facility with tomographic µ‑XRPD imaging at the microscopic scale. The high chemical and spatial specificity of this imaging method was exploited to further elucidate the degradation pathway of the red lead pigment.

Abstract: Dit onderzoek presenteert een overzicht van de mogelijkheden van LA-ICP-MS als een techniek voor kwantitatieve analyse, bepalen van isotoopverhoudingen en elementaire beeldvorming. Hiervoor wordt de techniek zelf voorgesteld en worden de belangrijkste parameters die een invloed hebben op de kwaliteit van een LA-ICP-MS meting beschreven. Voor kwantitieve analyse worden de huidige calibratiestrategieën voor LA-ICP-MS toegelicht, zowel op het vlak van selectie en bereiding van standaarden als op het vlak van dataverwerking. Daarnaast werd een nieuwe calibratiestrategie voorgesteld, gebaseerd op een lineaire combinatie van standaarden. Een case study met de traditionele calibratiestrategie uit de literatuur werd uitgevoerd en vergeleken met data van SEM-EDX om een referentiekader te schetsen voor de performantie van de techniek. In een tweede case study werd onze nieuwe calibratiestrategie toegepast en werd er uitsluitend gebruik gemaakt van LA-ICP-MS, wat uitstekende resultaten opleverde. Met het oog op het bepalen van isotoopverhoudingen, werd er onderzocht wat de limieten zijn van het gebruik van een lage resolutie quadrupool massaspectrometer voor deze bepaling. Dit stelde ons in staat om de te verwachten accuraatheid en precisie in te schatten. De performantie bleek goed genoeg te zijn om weapon-grade plutonium te onderscheiden van global fall-out, zoals het werd aangetoond in de case study omtrent dit onderwerp. Uiteindelijk hebben we ook LA-ICP-MS geëvalueerd als een techniek voor elementaire beeldvorming, waarbij we tevens de meest courante multivariate data analyse hebben beschreven. Om de techniek te plaatsen tegenover andere elementaire technieken, werd een historisch verffragment geanalyseerd dat in het verleden reeds geanalyseerd was met SEM-EDX and μ-XRD. Op die manier konden we de resultaten accuraat vergelijken met de andere technieken.

Abstract: Fiber optic surface plasmon resonance (FO-SPR) has shown its potential for the detection of nucleic acids and more recently the technology has been combined with catalytic active strands such as DNAzymes. In this work, an innovative, generic solid-phase DNA sensor concept is presented, based on FO-SPR and PCR amplified DNAzyme activity. Improved levels of specificity and sensitivity were obtained down to picomolar concentrations. Moreover, the FO-SPR sensor concept enables AuNP amplified DNA target detection, independent of the target sequence length. The FO-SPR sensor was demonstrated for the screening of the mobile colistin resistance (MCR-2) gene, a gene important for the antimicrobial resistance in Gram-negative species such as E. Coli.