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Vermeulen M (2017) Natural and amorphous arsenic sulfide pigments : characterization, degradation and influence of the binding medium. 258 p
Keywords: Doctoral thesis; AXES (Antwerp X-ray Analysis, Electrochemistry and Speciation)
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Marchetti A (2021) Novel insights and approaches for the analytical characterization of tangible cultural heritage objects. 333 p
Abstract: Cultural heritage represents the vehicle of our cultural identity, handed over from past to future generations throughout human history. As a repository of fundamental cultural and social values, the preservation of all forms of cultural heritage is a responsibility of every society and of humankind as a whole. When it comes to tangible cultural heritage, preservation of heritage translates into preservation of objects and, therefore, of the materials they are constituted of. This crucial task relies heavily on the application of scientific analytical methods to answer material and conservation-related questions. The fundamental contribution of this analytical approach led, in the past decades, to an ever-deepening understanding of the factors governing the degradation of cultural heritage. However, the extreme complexity of the heritage object-environment system results in a massive research field, which inevitably presents relevant open questions. This is where the present PhD work comes into play, attempting to fill knowledge gaps in literature by starting from specific case studies and un-answered research questions. The multianalytical research conducted during this PhD unraveled fundamental information on the properties governing the reactivity and long-term behavior of different classes of materials, from α-brass in an indoor environment to artists’ pigments in the presence of light, moisture and soluble particulate matter (PM). The paramount importance of the synthesis conditions on the composition, physical properties and reactivity of heritage materials was also demonstrated, in particular for stable lead pyroantimonate and unstable Geranium lake artists’ pigments. Moreover, the study and characterization of specific heritage objects, namely a series of 16th century reliquary altarpieces and the painting L’Arlesienne, by Vincent Van Gogh, allowed to obtain relevant insights into their composition and on potential risks for their conservation. The challenging nature of the samples considered, created the perfect opportunity to test an innovative spectroscopic technique, optical photo-thermal IR (O-PTIR), for the characterization of heritage materials. Striking results were obtained, highlighting a great potential for the application of this non-destructive sub-micron molecular spectroscopy to the analysis of cultural heritage. Finally, in the last section of this work, strategies to implement the continuous monitoring of PM levels in indoor environmental quality studies were also considered, with a particular focus on the identification of environmental hazards for the collections housed in specific conservation environments (War Heritage Institute in Brussels and St. Martin’s church in Aalst, BE).
Keywords: Doctoral thesis; AXES (Antwerp X-ray Analysis, Electrochemistry and Speciation)
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Daems E (2021) Shaping up oligonucleotides : aptamer-target recognition investigated by native mass spectrometry. 235 p
Abstract: Aptamers are short, synthetic DNA or RNA molecules that are characterized by a specific 3D conformation which enables specific target recognition. Aptamers are promising tools in many application fields from sensing to therapeutics. One of the major challenges in the aptamer field is understanding the relationship between the sequence and what determines the higher-order structure and specific interactions with targets. Therefore, this PhD thesis focuses on the use of different mass spectrometry (MS) based approaches to characterize aptamers and their interactions. Several of these approaches are already widely applied to study other biomolecules, such as proteins, but are still largely unexplored for aptamers and oligonucleotides in general. A first focus was put on obtaining information on the higher-order structure and conformational stability of aptamers using a combination of MS and with ion mobility (IM) spectrometry by performing collision-induced unfolding (CIU) experiments. CIU was shown to hold great promise to analyze the conformational dynamics and gas-phase stabilities of aptamers. Next, the capabilities and limitations of native IM-MS for the analysis of noncovalent interactions of aptamers were demonstrated. The conformational behavior and interactions of cocaine-binding aptamers were studied and it was found that relative binding affinities of aptamers that only differ slightly in sequence and structure can be determined using native MS. Moreover, native IM-MS allowed the detection of small conformational changes upon binding of a target, which were found to be dependent on the binding mode of the aptamer. An adaptive binding mechanism was suggested for flexible aptamers that require more reorganization upon binding. In the final part of this thesis, the importance of thoroughly characterizing and validating aptamer-target interactions before using them in an application was emphasized. Moreover, the gathered insights were applied in our own development of a proof-of-concept aptamer-based sensor. This was shown by investigating the interactions of ampicillin aptamers which were found to not bind the target they were selected for in the first place. A multi-analytical approach combining complementary techniques was used for this purpose since no single technique is generally applicable to characterize all aptamers and their interactions and to obtain a comprehensive picture of the aptamer-target interactions. Furthermore, such multi-analytical approach was used to characterize a testosterone-binding aptamer while developing an aptamer-based electrochemiluminescent sensing strategy for this target. This shows the importance of native MS, in combination with other techniques, to thoroughly understand the aptamer-target interactions in the development of a designed application.
Keywords: Doctoral thesis; AXES (Antwerp X-ray Analysis, Electrochemistry and Speciation)
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Piñ,era Herná,ndez I (2014) Simulation of atom displacements induced by photons and electrons in solids. 137 p
Keywords: Doctoral thesis; AXES (Antwerp X-ray Analysis, Electrochemistry and Speciation)
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Amiri-Aref M (2015) Utilization of magnetic nanoparticles and carbon nanotubes to fabrication electrochemical sensors for determination of some important biological and pharmaceutical compounds. 137 p
Keywords: Doctoral thesis; AXES (Antwerp X-ray Analysis, Electrochemistry and Speciation)
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Sleegers N (2021) Cephalosporin antibiotics : electrochemical fingerprints and redox pathways investigated by mass spectral analysis. 208 p
Keywords: Doctoral thesis; AXES (Antwerp X-ray Analysis, Electrochemistry and Speciation); Antwerp Electrochemical and Analytical Sciences Lab (A-Sense Lab)
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Li B (2012) Aharonov-Bohm effect in semiconductor quantum rings. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Komendová, L (2013) Characteristic length scales and vortex interactions in two-component superconducting systems. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Carrillo Nuñ,ez H (2012) Combining the modified local density approach with variational calculus : a flexible tandem for studying electron transport in nano-devices. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Zarenia M (2013) Confined states in mono- and bi-layer grapheme nanostructures. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Kapra A (2013) Controlling the flux dynamics in superconductors by nanostructured magnetic arrays. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Lin N (2012) Dynamics of interacting clusters in low-dimensional superconductors. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Zhang L (2015) Effects of quantum confinement in nanoscale superconductors : from electronic density of states to vortex matter. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Masir MR (2012) Electronic properties of graphene in inhomogeneous magnetic fields. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Kishore VVR (2013) Electronic structure of core-shell nanowires. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Sivek J (2015) First-principles characterization and functionalization of graphene-like materials. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Dixit H (2012) First-principles electronic structure calculations of transparent conducting oxide materials. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Amini M (2014) First-principles study of defects in transparent conducting oxide materials. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Xu B (2011) Magnetic, calorimetric and electronic properties of vortex states in (3D) mesoscopic superconductors. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Grujić, MM (2015) Manifestations of intrinsic and induced magnetic properties of graphene nanostructures. University of Antwerp, Faculty of Sciences, Department of Physics, Antwerp
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Nasr Esfahani D (2014) Strongly correlated electronic systems : influence of electric field and doping. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Galvá,n Moya JE (2014) Structural properties of classical quasi-one-dimensional crystals and three-dimensional clusters. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Muñ,oz WA (2014) Superconducting correlations in single and multilayer graphene. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Chen Y (2012) Superconductivity in nanofilms and nanocylinders. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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da Costa DR (2015) Transport and confinement in monolayer and bilayer graphene nanostructures with different edges, interfaces and potentials. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Barbier M (2012) Transport properties of nanostructures and superlattices on single-layer and bilayer graphene. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Singh SK (2014) Vibrational properties of graphene nano-flakes and thermo-mechanical properties of graphene-like materials. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Geurts R (2011) Vortex-antivortex molecules in mesoscopic quantum systems. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Zhao H (2012) Vortex matter in superconductors with competing interactions : formation of vortex patterns and vortex dynamics. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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Schoeters B (2015) An ab initio study of the properties of doped semiconducting nanwires. Antwerpen
Keywords: Doctoral thesis; Condensed Matter Theory (CMT)
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