Abstract: Non-native species invasions are one of the most impactful drivers of biodiversity and ecosystem services loss worldwide. One aspect of plant species invasion, which is only recently starting to be recognized as a determinant of invasion success, is the symbiosis between plant and mycorrhizal fungi. Here, I focus on anthropogenic disturbance in mountain ecosystems and its impact on plant communities and mycorrhizal fungi to answer how these communities are impacted by disturbance and whether non-native plants can benefit to establish and spread. To this end I used a combination of different approaches: 1) repeated surveys of plants and arbuscular mycorrhizal fungi along disturbed roadsides in the mountains of Norway, 2) combining a global dataset of native and non-native plants along mountain roads with a database associating plants with their mycorrhizal types, and 3) an in-situ experiment measuring non-native plant success and changes in fungal community following different types of disturbances. Through these methods, I could assess the effects of anthropogenic disturbance on mycorrhizal symbiosis and non-native plant species at multiple scales and resolutions. We found that road disturbance has a globally consistent effect on mycorrhizal types in mountain systems, as plants associated with arbuscular mycorrhizal (AM) fungi were more abundant following disturbance. Conversely, vegetation associated with either ectomycorrhizal (EcM) or ericoid mycorrhizal (ErM) fungi was less abundant in disturbed sites. In the regional study, AM fungi were most abundant and diverse in the roots of plant communities affected by road disturbance. Non-native plants were also restricted to these disturbed sites. The experimental results showed that physical disturbance and nutrient addition have negative effects on EcM fungi and positive effects on fungal pathogens, and facilitate non-native plant success. Our results show that anthropogenic disturbance does have an effect on mycorrhizal fungi that in turn impacts the distribution of plant species in disturbed mountain systems. The resulting shift in mycorrhizal fungi benefiting AM fungi and AM plant species could have implications for non-native plant invasions. Indeed, we know that non-native plants predominantly form associations with AM fungi. Therefore, anthropogenic disturbance can facilitate non-native plant success through disruption of the native fungal communities, and especially so in high elevation and cold climate regions which are naturally less dominated by AM plants. I believe this highlights the importance of mycorrhizal symbiosis in understanding plant invasions and emphasizes the importance of monitoring sources of anthropogenic disturbance in mountains to prevent future establishment of non-native plants.

Abstract: De bijdrage gaat dieper in op de relatie tussen ruimte en gezondheidsongelijkheid, bespreekt gezondheidsongelijkheid vanuit een rechtenperspectief en illustreert een aantal praktijken waarin de aandacht voor ruimte en gezondheidsongelijkheid samenkomen.

Abstract: Soil microorganisms control the fate of soil organic carbon. Warming may accelerate their activities putting large carbon stocks at risk of decomposition. Existing knowledge about microbial responses to warming is based on community-level measurements, leaving the underlying mechanisms unexplored and hindering predictions. In a long-term soil warming experiment in a Subarctic grassland, we investigated how active populations of bacteria and archaea responded to elevated soil temperatures (+6°C) and the influence of plant roots, by measuring taxon-specific growth rates using quantitative stable isotope probing and 18 O water vapor equilibration. Contrary to prior assumptions, increased community growth was associated with a greater number of active bacterial taxa rather than generally faster-growing populations. We also found that root presence enhanced bacterial growth at ambient temperatures but not at elevated temperatures, indicating a shift in plant-microbe interactions. Our results, thus, reveal a mechanism of how soil bacteria respond to warming that cannot be inferred from community-level measurements.

Abstract: Tropical rainforests host an exceptional biodiversity and play a fundamental role in the regulation of global climatic cycles. Soil fungi and bacteria are key players in the transformation and processing of nutrients in terrestrial ecosystems while having an essential role as tree mutualists or antagonists. Still, there are gaps in our understanding of the main variables driving soil microbes on these forests and it is unclear how future climate change scenarios may impact soil microbes and further affect the ecosystem. In this thesis, we first explored the drivers of the microbial community composition in two pristine forests in French Guiana by using amplicon DNA sequencing. The neighboring tree species were found to be a crucial factor influencing the fungal and bacterial community composition at our sites regardless of the season. Additionally, within the environmental factors explored, soil moisture, phosphorus (P) and nitrogen (N) availability were consistently the main soil properties controlling the composition of soil microbial communities. Secondly, as increased nutrient deposition due to anthropogenic activities are expected to affect tropical forests ecosystems N and P availability, a factorial N and P nutrient addition experiment in the same sites was used to assess the effects of changes in the soil nutrient stoichiometry on the soil microbial communities. These results showed that after 3 years of nutrient additions, the bacterial and fungal community composition was affected by both the N and P additions. Besides, the fungal community composition had a stronger response to the nutrient addition, especially when P was added. Moreover, when the nutrient addition effect was assessed in bacteria and fungi with different life strategies, we found different nutrient optima between them. Furthermore, to study the effect of the connection to an existing mycorrhizal mycelium on tree seedlings, I established a mycelium exclusion experiment. Interestingly, we could not detect an effect of the mycorrhizal mycelium exclusion on the seedling N uptake, performance, or fungal community composition in roots after one year. All together this work provides a deeper understanding of the factors influencing the soil microbial communities on these lowland tropical forests, demonstrating that the tree community composition exerts a higher influence on the soil microbial community composition than previously expected. Moreover, our results show that the fungal and bacterial community composition and its relationship with trees in the vicinity is highly dependent on the ecosystem nutrient availability.

Abstract: Two-dimensional (2D)egg-shape equa-tions are potent mathematical tools, facilitating the description of avian egg geometries in their applied mathematical modelling and poultry science implementations. In the present study, 2 distinct polar equations,namely the Carter-Morley-Jones equation (CMJE) and simplified Gielis equation(SGE), were used to fit the profile geometries of 415 domestic pigeon (Columba livia domestica) eggs based on nonlinear least squares regression methods.

Abstract: Transmission electron microscopy is an important technique in the exploration of materials’ structures. This is especially true since the development of electron optical aberration correctors greatly facilitated atomic resolution imaging. We are currently experiencing an ongoing revolution in electron microscopy with the widespread adoption of direct electron detectors. Scientists have reported a lot of key scientific findings facilitated by direct electron detectors. One particular research domain is electron ptychography, which holds promise for unraveling the intricate structures of highly beam-sensitive materials like bio samples and achieving super-resolution without the limitation of aperture in the condenser lens system. Nevertheless, challenges persist both in experimental setups and algorithmic processes. Issues such as the comparatively sluggish scanning speed of cameras and contrast reversals of the reconstructed phase for relatively thick specimens, disrupting phase or weak phase approximations, remain noteworthy limitations. This thesis addresses these challenges by the event-driven Timepix3 detector, presenting a viable solution to the speed bottleneck. Moreover, innovative approaches for applying electron ptychography to relatively thick samples, employing a middle focusing strategy, are proposed. This research aims to push the boundaries of electron microscopy, offering solutions to existing limitations and advancing the field towards more efficient and accurate imaging techniques.

Abstract: In the context of global challenges such as climate change and environmental pollution, photocatalysis evolved as one of the promising strategies for sustainable energy conversion and pollutant degradation. In this thesis, photocatalysis using gas phase deposited bimetallic nanoclusters (BNCs) on TiO2 supports is studied in the context of self-cleaning surfaces and photoelectrochemical (PEC) water splitting applications. Thanks to their plasmonic properties, BNCs made of coinage metals can serve as efficient cocatalysts for the degradation of organic pollutants and surface contaminants under light irradiation. They also hold great promise for PEC water splitting, a promising pathway for renewable hydrogen production, which can be used in hydrogen fuel cells or for the environmentally friendly production of fuels in, for example, CO2 hydrogenation processes. The small size and high surface-to-volume ratio of plasmonic BNCs play pivotal roles in influencing the efficiency and selectivity of photocatalytic processes. BNCs have unique optical, physical, chemical, and structural properties distinctly different from their bulk and monometallic counterparts. These properties can be fine-tuned at the single particle level by their size, composition, and atomic arrangement, but also by interaction with other particles through the coverage and through interaction with the support. To design better photocatalysts it is crucial to carefully understand the BNCs’ characteristic properties, especially at the atomic level where synergies between different elements are sought. To achieve this objective, BNCs with well-defined sizes and compositions are deposited on TiO2 supports and we studied their structural properties and their influence on the photocatalytic activity. The general procedure followed in this thesis is the production and deposition of BNCs on TiO2 by the cluster beam deposition (CBD) technique, followed by structural and optical characterization to understand their tailored properties, and photocatalytic testing either for photodecomposition of organic molecules or PEC water splitting. In a first study, AuxAg1-x (x = 1, 0.9, 0.7, 0.5, 0.3, and 0) alloy BNCs with different compositions are synthesized in the gas phase and deposited from a molecular beam on TiO2 P25 supports. The photocatalytic self-cleaning activity of as-prepared samples is tested under UV and visible light towards stearic acid (SA) degradation. SA is a widely accepted model contaminant, which represents the group of organic fouling compounds that typically contaminates glass surfaces. A composition-dependent activity is observed with the Au0.3Ag0.7 nanocluster modified TiO2 exhibiting the highest photoactivity. Scanning transmission electron microscopy (STEM) measurements reveal that, for a mass loading corresponding to an equivalent of 4 atomic monolayers (MLs), the BNCs are uniformly distributed over the surface. The clusters have an average size of 3.5 ± 0.5 nm and are crystalline in nature. The atomic structure is characterized by X-ray absorption fine structure (XAFS) spectroscopy and their electronic structure by X-ray photoelectron spectroscopy (XPS). These measurements demonstrate a charge redistribution between the Ag and Au atoms when alloyed at the nanoscale. The effect of this charge redistribution is likely the stabilization of Ag against oxidation and directly affects the catalytic properties of the clusters. It is suggested that the highest photoactivity of 4 ML loaded Au0.3Ag0.7 under solar light results from a combination of four main possible contributing factors: (i) injection in TiO2 of excited carriers that are generated by the localized surface plasmon resonance (LSPR) effect of the BNCs in the visible light wavelength range which overlaps with the sun’s irradiance spectrum. (ii) a strong near-field enhancement that increases the photoabsorption by the TiO2 for photons that have enough energy to overcome the high bandgap, (iii) the optimized total metal loading of 4 ML leaves enough of the TiO2 surface accessible for light absorption, and finally (iv) an effective charge distribution between Au and Ag. This study demonstrates that CBD is an efficient approach for fabricating well-defined, tunable AuAg plasmon-based photocatalysts for self-cleaning applications, outperforming their monometallic counterparts as well as bimetallic alternatives obtained through colloidal methods. In a second study, titania nanotubes (TNTs) are modified with a series of AuxCu1-x (x = 1, 0.75, 0.5, 0.25, and 0) BNCs using the CBD technique. Based on the results of the first study, we opted again for a loading of 4 ML. TNTs are known for their high surface area, fast charge transfer, and corrosion resistance, while keeping the inherent strengths of traditional TiO2 materials. They prove to be promising photoanodes, enhancing photocurrent in PEC applications for water oxidation. In this work the TNTs are grown via anodic oxidation of a titanium metal foil. The crystalline anatase phase of the grown TNTs is confirmed by the X-ray diffraction technique (XRD), while transmission electron microscopy (TEM) provides information about the size and composition of the deposited BNCs. XAFS provides further structural information, while XPS measurements reveal charge redistribution between Au and Cu, which can aid in the enhancement of the PEC activity. Oxidation of as-prepared electrodes over the time results in structural changes with CuxO at the outer shell functioning as a protective layer, while the majority of the core is an alloy. The optical properties, studied through UV-Vis spectroscopy confirm the extended absorption range of the cluster-modified TNTs towards the visible region. The charge carrier recombination rate is derived from photoluminescence (PL) measurements. The as-prepared electrodes are tested photoelectrochemically for the generation of an anodic photocurrent using simulated sunlight. It is found that the AuxCu1-x (x = 1, 0.75, 0.5, 0.25 and 0) BNC modified TNTs show a remarkable enhancement in the anodic photocurrent relative to pristine TNTs, with Au0.25Cu0.75 exhibiting the highest photocurrent. This is due to the combination of many possible factors. Firstly, the charge redistribution between Au and Cu and increase stability of the Au0.25Cu0.75 electrode as observed in XAFS, indicates that the electronic effect in the cluster is also one of the governing factors for PEC activity. Secondly, formation of a surface CuOx layer, protects against further corrosion of the metallic AuCu BNCs cores. Third, reduced recombination of charge carriers is indicated by lower photoluminescent (PL) intensity compared to pristine TNTs and all other electrodes except pure gold, as observed in PL spectra. This implies that the generated charge carriers are efficiently separated by Au0.25Cu0.75 NCs acting as electron sinks and easily available for redox reactions. Fourth, the highest interfacial charge transfer efficiency is evidenced by the electrochemical impedance spectroscopy (EIS), leading to more efficacious charge migration and separation, facilitating the water oxidation surface reaction. A final beneficial factor is the uniform deposition of well-defined, size- and composition-controlled, ligand-free BNCs. Such BNCs provide more effective surface sites to the reaction medium, in contrast to electrodes synthesized by e.g. sol-gel methods, where (in)organic residues on metal surfaces may decrease the efficiency.

Abstract: This thesis explores superfluidity in exciton bilayer systems, semiconductor structures with two thin conducting layers, one doped with electrons and the other with holes, separated by a few nanometers. Theoretical predictions suggest these systems can exhibit superfluid, supersolid, exciton normal solid, and Wigner crystal phases. Identifying clear markers of superfluidity is crucial due to experimental challenges in confirming excitonic superfluidity. This thesis focuses on two phenomena: the Josephson effect and density collective modes. For the Josephson effect, we propose an exciton bilayer Josephson junction in double monolayer Transition Metal Dichalcogenides. We suggest using the Shapiro method to measure the exciton Josephson current and propose fabricating the device with a tunable potential-barrier height. In low potential-barrier regions, the exciton superfluid flows over the barrier, while in high potential-barrier regions, flow is driven by quantum tunnelling. This helps delineate the boundary between Bose-Einstein Condensate (BEC) and BCS-BEC crossover regimes. For density collective modes, we examine low-temperature behaviour to identify the normal-superfluid transition as a function of density. In the normal state at high density, the system exhibits low-energy optic and acoustic modes. As density decreases, entering the superfluid phase, the response changes, with the superfluid gap blocking these modes. We expect pair-breaking collective modes to appear at the onset of exciton superfluidity due to the Coulomb interaction. Our theoretical model developed using a path-integral approach and the Hartree-Fock approximation, includes screening and intralayer correlations. We calculate gap and number equations governing superfluid phase behaviour, showing that intralayer correlations enhance screening, especially in the BCS-BEC crossover regime. This leads to a reduced superfluid gap, a shift in the BEC to BCS-BEC crossover boundary to lower densities, and the disappearance of a predicted minimum in electron-hole pair size. This study advances the understanding of superfluidity in exciton bilayer systems, providing theoretical predictions and experimental proposals. By identifying clear markers of superfluidity, this work contributes to the broader effort of realizing and characterizing excitonic condensed phases in realistic systems.

Abstract: The global challenge posed by increasing levels of greenhouse gases and the associated detrimental impacts of global warming necessitate a strategic shift from traditional fossil fuel-based energy systems to more sustainable, renewable, and circular energy and material solutions. Consequently, the potential of photoactive nanoparticles, particularly those that harness light-driven processes, has captured extensive scientific interest as a viable approach to mitigating energy and environmental challenges on a global scale. Although, the adoption of solar light based solutions in the chemical industry has been very less due to sluggish reaction rates and its cascading effects on its economics. The primary focus of this dissertation is the study of plasmonic metal nanoparticles and metal oxide nanoparticles, emphasizing their applications in light-driven energy conversion. The distinctive properties of plasmonic materials, especially surface plasmon resonance (SPR), are pivotal in these applications. SPR involves the oscillation of electron clouds at the surface of nanoparticles when resonating with incident electromagnetic radiation, significantly enhancing solar radiation absorption. This feature is crucial for addressing the limitations of semiconductor photocatalysts like TiO2, which typically exhibit restricted absorption of solar irradiation. The objective of this dissertation is to further optimize the plasmonic enhancement mechanisms by strategically tuning the interactions between plasmonic nanoparticles and TiO2. This is achieved through the development of core-shell nanostructures and the self-assembly of supraparticles, designed to enhance plasmonic photocatalytic systems. The dissertation begins by elucidating the basic concepts and ideations behind the construction of these nanostructures and their roles in enhancing plasmonic photocatalysis, focusing on mechanisms such as near-electric field enhancement, electron transfer, and enhanced photon absorption. To achieve these objectives, modified synthesis techniques were developed to fabricate novel Au@TiO2 core-shell structures with precisely controlled TiO2 shell thickness and self-assembled Au-TiO2 supraparticles with variable sizes. The thesis further delves into the structural characterization of these synthesized nanoparticles, introducing both basic and advanced electron microscopy techniques. For the specific applications of these structures, it was found that Au@TiO2 core-shell nanoparticles with an optimal 4nm TiO2 shell thickness show significant enhancement in the hydrogen evolution reaction. Additionally, the largest Au-TiO2 supraparticles demonstrate superior efficacy in hydrogen peroxide generation. This work not only deepens the scientific understanding of plasmonic materials but also contributes to the development of renewable energy materials.

Abstract: The principal aim of this work is to study the effect of the processes of sintering and Pd doping of SnO2 gas sensor materials on the conversion of CO to CO2. For this purpose, the gas phase above screen printed sensor material is investigated using FTIR spectroscopy, while surface area, porosity and particle size measurements are performed on the SnO2 powders. During sintering, larger agglomerates of primary particles are formed, which results in a larger conversion degree of CO. The effect of Pd doping of the tin dioxide film on the CO conversion is more pronounced. The transformation of CO starts at a lower temperature and the conversion degree increases remarkably.