Abstract: Adequate removal of pollutants from sewage is important to protect the environment and public health. Today, sewage treatment plants are operational in many parts of the world, and although the used technologies are effective in removing pollutants from wastewater, they are energy- and resource-intensive. Reshaping sewage treatment into a two-stage system, with separated organic carbon and nitrogen removal, facilitates the transformation towards energy-positive sewage treatment. This thesis will focus on resource-efficient nitrogen removal from sewage via partial nitritation/anammox (PN/A), with reduced organic carbon and oxygen consumption compared to conventional techniques. PN/A relies on the teamwork between two microbial groups to convert ammonium into nitrogen gas. Several other groups of microbes however can proliferate in the sludge, competing for substrate with the key players, lowering the nitrogen removal efficiency and increasing the energy demand. To obtain the desired microbial community, control tools should be applied to selectively promote the desired microbes while suppressing the unwanted competitors. In this thesis, multiple control tools were studied to establish a workable framework for successful implementation of PN/A in the main stream of a sewage treatment plant. These tools can be divided into three categories: i) kinetic tools, regulating substrate availability (e.g., oxygen availability control and residual ammonium concentration), ii) physical tools, revolving around sludge retention and selection (e.g., sludge age control and sludge aggregation form), and iii) chemical tools, exposing the sludge to stress conditions for which the unwanted microbes are vulnerable (e.g., sludge treatments with a single stressor such as free ammonia). The first research chapter focussed on oxygen availability control and single-stressor sludge treatments. The following two chapters covered the development of a novel multi-stressor concept combining substrate starvation and exposure to sulphide and free ammonia. In the final research chapter, the previously obtained knowledge was combined into a demonstration study on pilot-scale. The combination of these control tools was found effective in achieving nitrogen removal via PN/A, both on lab- and pilot-scale. Consequently, the obtained results in this thesis can catalyse the implementation of mainstream PN/A by providing a toolbox with multiple control tools and clever reactor design, thus advancing the concept of energy neutrality and resource efficiency in sewage treatment plants.

Abstract: Climate-Smart Agriculture (CSA) is seeking to overcome the food security problem and develop rural livelihoods while minimizing negative impacts on the environment. However, when such synergies exist, the situation of small-scale farmers is often overlooked, and they are unable to implement new practices and technologies. Therefore, the main aim of this study is to improve CSA by adding the neglected but very important element “small-scale farmer”, and introduce Vulnerable-Smart Agriculture (VSA) as a complete version of CSA. VSA indicates, based on the results of this study, that none of the decisions made by policymakers can be realistic and functional as long as the voice of the farmers influenced by their decisions is not heard. Therefore, to identify different levels for possible interventions and develop VSA monitoring indicators, a new conceptual framework needs to be developed. This study proposed such a framework consisting of five elements: prediction of critical incidents by farmers, measuring the consequences of incidents, identifying farmers' coping strategies, assessing farmers' livelihood capital when facing an incident, and adapting to climate incidents. The primary focus of this study is on farmers' learning and operational preparation to deal with tension and disasters at farm level. Understanding the implications of threats from climate change and the recognizing of coping mechanisms will contribute to an increase in understanding sustainable management.

Abstract: Grafting organophosphonic acids modification (PAs) on metal oxides has shown to be a flexible technology to tune the surface properties of metal oxides for various applications. Nevertheless, there are still puzzles that need to be addressed, such as the correlations between metal oxides properties (types of surface reactive sites) and the modification (modification degree), the correlations between metal oxides properties and the properties of modified surfaces. Moreover, the currently used liquid-phase method for the grafting has associated impeding effects of solvent on tailoring the modification degrees, and also causes the formation of metal phosphonate side products. The solid-phase method can induce the unwanted changes in crystal phase of supports. Based on these questions, the three titania supports with divergent surface properties were selected as the metal oxides supports investigated, propylphosphonic acid (3PA) modification was carried out under the same synthesis conditions: four different concentrations, two solvents (water or toluene), and one reaction time (4 h) and temperature (90 ). MeOH chemisorption was introduced to probe the surface (un)reactive sites for 3PA modification. On the other hand, MeOH chemisorption and inverse gas chromatography (IGC) were combined to characterize the changes in surface polarity and acidic properties induced by the modification. Next, a solid-phase method, manual grinding, was proposed to graft 3PA on titania, avoiding the impeding effects of solvent on improving modification degree and the formation of the titania phosphonate side products, as well as preserving the crystal phase. The results indicate that methanol chemisorption can qualitatively analyze the surface active sites that are consumed by 3PA modification, its chemisorption capacity shows the consistent trend with the maximum modification degree, hereby revealing the kinds of interactions that are important in controlling surface coverage. Titania supports is found to play an important role in changes in surface polarity and acidic properties by charactering the three modified titania samples at a similar modification degree using the methanol chemisorption coupled with in-situ infrared and thermogravimetric-mass spectrometer, and the IGC. Moreover, IGC provides additional information about the changes in binding modes. Furthermore, grafting 3PA modification on titania was achieved by manual grinding. Compared to the liquid-phase method, the maximum modification degree obtained by the manual grinding is 25 % higher while using 83.3 % or 75.0% lower amounts of expensive 3PA and limiting the formation of titania phosphonate side products. Compared to the reactive milling method, the proposed manual grinding method preserves the crystal phase(s) of titania.

Abstract: Dry deposition is an important process determining pollutant concentrations, especially when studying the influence of urban green infrastructure on particulate matter (PM) levels in cities. Computational fluid dynamics (CFD) models of PM capture by vegetation are useful tools to increase their applicability. The meso-scale models of Zhang et al. (Atmos Environ 35:549-560, 2001) and Petroff and Zhang (Geosci Model Dev 3(2):753-769, 2010) have often been adopted in CFD models, however a comparison of these models with measurements including all PM particle sizes detrimental to health has been rarely reported and certainly not for green wall species. This study presents dry deposition experiments on real grown Hedera helix in a wind tunnel setup with wind speeds from 1 to 4 m s(-1) and PM consisting of a mixture of soot (0.02 – 0.2 mu mu m) and dust particles (0.3 – 10 mu mu m). Significant factors determining the collection efficiency (%) were particle diameter and wind speed, but relative air humidity and the type of PM (soot or dust) did not have a significant influence. Zhang's model outperformed Petroff's model for particles < 0.3 mu mu m, however the inclusion of turbulent impaction in Petroff's model resulted in better agreement with the measurements for particles > 2 – 3 mu mu m. The optimised model had an overall root-mean-square-error of similar to 4% for collection efficiency (CE) and 0.4 cm s-1 for deposition velocity (nu d), which was shown to be highly competitive against previously described models. It can thus be used to model PM deposition on other plant species, provided the correct parameterisation of the drag by this species. A detailed description of the spatial distribution of the vegetation could solve the underestimation for particle sizes of 0.3 – 2 mu mu m.

Abstract: We introduce a simple enhanced sampling approach for the calculation of free energy differences and barriers along a one-dimensional reaction coordinate. First, a small number of short nonequilibrium simulations are carried out along the reaction coordinate, and the Jarzynski equality is used to learn an approximate free energy surface from the nonequilibrium work distribution. This free energy estimate is represented in a compact form as an artificial neural network and used as an external bias potential to accelerate rare events in a subsequent molecular dynamics simulation. The final free energy estimate is then obtained by reweighting the equilibrium probability distribution of the reaction coordinate sampled under the influence of the external bias. We apply our reweighted Jarzynski sampling recipe to four processes of varying scales and complexities.spanning chemical reaction in the gas phase, pair association in solution, and droplet nucleation in supersaturated vapor. In all cases, we find reweighted Jarzynski sampling to be a very efficient strategy, resulting in rapid convergence of the free energy to high precision.

Abstract: Rhodotorula kratochvilovae has shown to be a promising species for microbial oil production from lignin-derived compounds. Yet, information on R. kratochvilovae’s detoxification and microbial oil production is scarce. This study investigated the growth and microbial oil production on the phenolic-containing effluent from poplar steam explosion and its detoxification with five R. kratochvilovae strains (EXF11626, EXF9590, EXF7516, EXF3697, EXF3471) and compared them with Cutaneotrichosporon oleaginosum. The R. kratochvilovae strains reached a maximum growth rate up to four times higher than C. oleaginosum. Furthermore, all R. kratochvilovae strains generally degraded phenolics more rapidly and to a larger extent than C. oleaginosum. However, the diluted substrate limited the lipid production by all strains as the maximum lipid content and titre were 10.5% CDW and 0.40 g/L, respectively. Therefore, future work should focus on increasing lipid production by using advanced fermentation strategies and stimulating the enzyme excretion by the yeasts for complex substrate breakdown.

Abstract: The chemical characterization of particulate matter inside and outside of confined bus shelters has been discerned for the first time. Transit patrons are at risk due to the close vicinity of densely trafficked areas resulting in elevated pollution footprints. Incomplete combustion processes, as well as exhaust and wear and tear emissions from public and personal transportation vehicles, are key contributors to degraded urban air quality and are often implicated as causal to various diseases in humans. Urban planning, therefore, includes efficient public transport systems to mitigate the effect. The bus rapid transit system was inaugurated in Curitiba to ensure dedicated traffic lanes, major bus interchanges and semi-confined bus stops called tube stations. To assess the chemical risk that the passengers are exposed to, an investigation of the aerosol inside and outside five of these tube stations was launched. Electron probe X-ray micro-analysis and X-ray fluorescence were used to determine the elemental composition of individual and of bulk particle samples. An aethalometer quantified the black carbon. Elemental concentrations inside the shelters were in general higher than outside, especially for traffic-related elements. The lead concentration exceeded the NAAS standard at times, although the average was below the guideline. The biogenic, organic and soot clusters showed the highest abundance for the city centre sites. The overall carcinogenic risk could be classed as moderate, and the risk was significant at two sites during one of the sampling campaigns. The non-carcinogenic risk is well below the significant value.

Abstract: Electron Bessel beams have been generated by inserting an annular aperture in the illumination system of a TEM. These beams have passed through a localised magnetic field. As a result a low amount of image rotation (which is expected to be proportional to the longitudinal component of the magnetic field) is observed in the far field. A measure of this rotation should give access to the magneti field. The two datasets have been acquired in a FEI Titan3 microscope, operated at 300kV. The file focalseries.tif contains a series of images acquired varying the magnetic field through the objective lens. The file lineprofile.ser contains a series of images acquired by scanning the beam over a sample with several magnetised nanopillars. For reference, check the associated publication.